Fungi 101

Fungi 101

Author: Jorge Cardenas-Alvarez
Editor: Roberto Arenas

Welcome to the Kingdom of Fungi! We have put together a short (but arguably high-yield) collection of fungal disease in the tropics for you to learn about. As usual, we will start with an introductory (“101”) lesson so that you can understand the basic concepts before diving deeper into our selected topics. If you are already confident in your foundational mycology knowledge, please feel free to skip this lesson. However, if you are looking for an overview of fungal infections or simply want a refresher, this lesson is for you!

What are fungi?

Classification of fungi

The simplest way to classify fungi is based on their morphology: yeasts vs. molds. Fungi can also be classified based on their disease extension: superficial, subcutaneous, and systemic. Neither classification is perfect, and, as always, there are overlaps and exceptions.

1. Morphology (Yeasts vs. Molds):

2. Disease extension (Superficial vs. Subcutaneous vs. Systemic):

Diagnostics in fungal infections

Diagnosis of fungal infections (as with all diseases) starts with a compatible clinical syndrome in the right epidemiological context. As mentioned earlier, clinical context is key (especially from samples taken from non-sterile sites) since many fungi are either ubiquitous in the environment or live as normal commensals among the human microbiota. Diagnosis is further supported by the following diagnostic modalities:

For a deeper dive on fungal diagnosis we recommend this article: Laboratory diagnosis of Fungal Infections — Microbe Online

What diseases will you learn?

Click on the next lesson to start learning about fungi!

References

This lesson was last updated on September 1st, 2026.